Variant report

Variant	rs62255621
Chromosome Location	chr3:105624235-105624236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2455883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255574	1.00[ASN][1000 genomes]
rs62255581	1.00[ASN][1000 genomes]
rs62255617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62255624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255627	1.00[ASN][1000 genomes]
rs62255628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255632	1.00[ASN][1000 genomes]
rs62255634	1.00[ASN][1000 genomes]
rs62261490	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62261494	1.00[ASN][1000 genomes]
rs62261537	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105621600-105626800	Weak transcription	Small Intestine	intestine
2	chr3:105623000-105627200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:105623400-105624400	Enhancers	Fetal Heart	heart
4	chr3:105623400-105625200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:105623400-105627000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:105623400-105627000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:105623400-105627000	Enhancers	Osteobl	bone
8	chr3:105623600-105624400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:105623600-105624600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:105623600-105625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:105623600-105625800	Enhancers	NHLF	lung
12	chr3:105623600-105626200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr3:105623600-105626800	Enhancers	HSMM	muscle
14	chr3:105623600-105627000	Enhancers	HSMMtube	muscle
15	chr3:105623600-105627000	Enhancers	NHDF-Ad	bronchial
16	chr3:105623800-105625000	Enhancers	HUVEC	blood vessel
17	chr3:105623800-105625400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:105623800-105625400	Enhancers	Left Ventricle	heart
19	chr3:105623800-105627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:105623800-105627000	Enhancers	Adipose Nuclei	Adipose
21	chr3:105624000-105625000	Weak transcription	Psoas Muscle	Psoas
22	chr3:105624000-105625000	Weak transcription	Right Ventricle	heart
23	chr3:105624000-105625200	Weak transcription	Placenta	Placenta
24	chr3:105624000-105626000	Weak transcription	Aorta	Aorta
25	chr3:105624000-105626200	Enhancers	Hela-S3	cervix
26	chr3:105624200-105625200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:105624200-105625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:105624200-105625200	Weak transcription	Right Atrium	heart
29	chr3:105624200-105625200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links