Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2455883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455885	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255574	1.00[ASN][1000 genomes]
rs62255581	1.00[ASN][1000 genomes]
rs62255617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255623	1.00[ASN][1000 genomes]
rs62255624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255627	1.00[ASN][1000 genomes]
rs62255628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255632	1.00[ASN][1000 genomes]
rs62255634	1.00[ASN][1000 genomes]
rs62261490	1.00[ASN][1000 genomes]
rs62261494	1.00[ASN][1000 genomes]
rs62261537	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2455888	CBLB	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105642800-105651000	Weak transcription	Placenta	Placenta
2	chr3:105647800-105650000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:105647800-105650200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:105647800-105650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:105648000-105650200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:105648000-105650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:105648600-105649000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:105648600-105649000	Enhancers	NHDF-Ad	bronchial
9	chr3:105648600-105649200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:105648600-105650000	Enhancers	HUVEC	blood vessel

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