Variant report

Variant	rs2455883
Chromosome Location	chr3:105655983-105655984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2455885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57733919	0.85[AFR][1000 genomes]
rs59825800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255574	1.00[ASN][1000 genomes]
rs62255581	1.00[ASN][1000 genomes]
rs62255617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255623	1.00[ASN][1000 genomes]
rs62255624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255627	1.00[ASN][1000 genomes]
rs62255628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255632	1.00[ASN][1000 genomes]
rs62255634	1.00[ASN][1000 genomes]
rs62261490	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62261494	1.00[ASN][1000 genomes]
rs62261537	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105650600-105656400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:105651800-105657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:105652200-105656400	Weak transcription	Fetal Brain Male	brain
4	chr3:105653000-105656000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:105653200-105656000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:105653400-105656000	Weak transcription	Fetal Lung	lung
7	chr3:105653400-105656400	Weak transcription	Fetal Kidney	kidney
8	chr3:105653400-105656800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:105653400-105656800	Weak transcription	HSMM	muscle
10	chr3:105654000-105656800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:105654400-105656400	Weak transcription	NHDF-Ad	bronchial
12	chr3:105655800-105658200	Enhancers	Fetal Stomach	stomach

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