Variant report

Variant	rs2470704
Chromosome Location	chr3:105662998-105662999
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2455883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57733919	0.85[AFR][1000 genomes]
rs59825800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255574	1.00[ASN][1000 genomes]
rs62255581	1.00[ASN][1000 genomes]
rs62255617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255623	1.00[ASN][1000 genomes]
rs62255624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255627	1.00[ASN][1000 genomes]
rs62255628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255632	1.00[ASN][1000 genomes]
rs62255634	1.00[ASN][1000 genomes]
rs62261490	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62261494	1.00[ASN][1000 genomes]
rs62261537	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105657600-105663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:105658400-105663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:105658400-105663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:105662600-105663200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:105662600-105663400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:105662600-105663400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:105662600-105663400	Enhancers	NH-A	brain
8	chr3:105662600-105663400	Enhancers	Osteobl	bone
9	chr3:105662600-105663600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:105662600-105663800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:105662600-105663800	Enhancers	HMEC	breast
12	chr3:105662600-105664400	Enhancers	HSMM	muscle
13	chr3:105662600-105664600	Enhancers	NHEK	skin
14	chr3:105662600-105664600	Enhancers	NHLF	lung
15	chr3:105662600-105667200	Enhancers	NHDF-Ad	bronchial

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