Variant report

Variant	rs2060556
Chromosome Location	chr1:224916110-224916111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224912065..224916127-chr1:224919460..224922896,4	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10399959	1.00[EUR][1000 genomes]
rs1078794	1.00[EUR][1000 genomes]
rs10915724	1.00[EUR][1000 genomes]
rs10915732	1.00[EUR][1000 genomes]
rs12079808	1.00[EUR][1000 genomes]
rs12086802	1.00[EUR][1000 genomes]
rs12097593	1.00[EUR][1000 genomes]
rs13376360	1.00[EUR][1000 genomes]
rs16854034	1.00[EUR][1000 genomes]
rs16854471	1.00[EUR][1000 genomes]
rs16855953	1.00[EUR][1000 genomes]
rs16856828	1.00[EUR][1000 genomes]
rs2244108	1.00[EUR][1000 genomes]
rs2244109	1.00[EUR][1000 genomes]
rs2244198	1.00[EUR][1000 genomes]
rs2245097	1.00[EUR][1000 genomes]
rs2254430	1.00[EUR][1000 genomes]
rs2449264	1.00[EUR][1000 genomes]
rs2449265	1.00[EUR][1000 genomes]
rs2449267	1.00[EUR][1000 genomes]
rs2449268	1.00[EUR][1000 genomes]
rs2449270	1.00[EUR][1000 genomes]
rs2449271	1.00[EUR][1000 genomes]
rs2449272	1.00[EUR][1000 genomes]
rs2449319	1.00[EUR][1000 genomes]
rs2449321	1.00[EUR][1000 genomes]
rs2449323	1.00[EUR][1000 genomes]
rs2449324	1.00[EUR][1000 genomes]
rs2489305	1.00[EUR][1000 genomes]
rs2489307	1.00[EUR][1000 genomes]
rs2489309	1.00[EUR][1000 genomes]
rs2489315	1.00[EUR][1000 genomes]
rs2489316	1.00[EUR][1000 genomes]
rs2489340	1.00[EUR][1000 genomes]
rs2489354	1.00[EUR][1000 genomes]
rs2489356	1.00[EUR][1000 genomes]
rs2489357	1.00[EUR][1000 genomes]
rs2489358	1.00[EUR][1000 genomes]
rs2489359	1.00[EUR][1000 genomes]
rs2489360	1.00[EUR][1000 genomes]
rs2501074	1.00[EUR][1000 genomes]
rs2501076	1.00[EUR][1000 genomes]
rs2501077	1.00[EUR][1000 genomes]
rs2501079	1.00[EUR][1000 genomes]
rs2501088	1.00[EUR][1000 genomes]
rs2516334	1.00[EUR][1000 genomes]
rs2662910	1.00[EUR][1000 genomes]
rs2662911	1.00[EUR][1000 genomes]
rs2662913	1.00[EUR][1000 genomes]
rs2802546	1.00[EUR][1000 genomes]
rs2802547	1.00[EUR][1000 genomes]
rs2802567	1.00[EUR][1000 genomes]
rs2802736	1.00[EUR][1000 genomes]
rs4121159	1.00[EUR][1000 genomes]
rs4256778	1.00[EUR][1000 genomes]
rs57535083	1.00[EUR][1000 genomes]
rs58205526	1.00[EUR][1000 genomes]
rs58651151	1.00[EUR][1000 genomes]
rs59730608	1.00[EUR][1000 genomes]
rs59839860	1.00[EUR][1000 genomes]
rs60428528	1.00[EUR][1000 genomes]
rs6426164	1.00[EUR][1000 genomes]
rs6693680	1.00[EUR][1000 genomes]
rs6694400	1.00[EUR][1000 genomes]
rs6698293	1.00[EUR][1000 genomes]
rs73129804	1.00[EUR][1000 genomes]
rs7550589	1.00[EUR][1000 genomes]
rs9426147	1.00[EUR][1000 genomes]
rs9803747	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
2	chr1:224907000-224920200	Weak transcription	Gastric	stomach
3	chr1:224909200-224920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:224910400-224920200	Weak transcription	Fetal Thymus	thymus
5	chr1:224911200-224920200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:224913000-224916200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:224913000-224916800	Enhancers	NHDF-Ad	bronchial
8	chr1:224913800-224916200	Enhancers	HMEC	breast
9	chr1:224913800-224916200	Enhancers	NHLF	lung
10	chr1:224913800-224916200	Enhancers	Osteobl	bone
11	chr1:224914200-224916200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:224914400-224920200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:224914800-224916800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:224914800-224924400	Weak transcription	Ovary	ovary
15	chr1:224915000-224924400	Weak transcription	Brain Anterior Caudate	brain
16	chr1:224915400-224918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:224915400-224918000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:224915400-224920800	Weak transcription	Spleen	Spleen
19	chr1:224915400-224921200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:224915600-224916200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:224915600-224920200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:224915600-224920200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:224915600-224920400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:224915600-224921200	Weak transcription	Dnd41	blood
25	chr1:224915800-224916200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:224915800-224917800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:224915800-224919800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:224915800-224921000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:224916000-224916200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:224916000-224917600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:224916000-224918200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:224916000-224921000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:224916000-224921000	Weak transcription	NH-A	brain

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