Variant report

Variant	rs2072845
Chromosome Location	chr6:25632153-25632154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1022492	0.80[CEU][hapmap]
rs13192159	0.88[CEU][hapmap]
rs13201652	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13217586	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1406924	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16890880	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2049967	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs2072849	0.80[CEU][hapmap]
rs2205935	0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2272824	0.80[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3747526	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3788992	0.80[AMR][1000 genomes]
rs3804120	0.87[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3804124	0.80[CEU][hapmap]
rs3804126	0.81[CEU][hapmap]
rs3827505	0.80[CEU][hapmap]
rs4588684	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6932016	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6935799	0.81[CEU][hapmap]
rs6939153	0.93[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7738571	0.80[CEU][hapmap]
rs7739227	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741329	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7767930	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7776417	0.81[CEU][hapmap]
rs9295665	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9348683	0.81[CEU][hapmap]
rs9356983	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9358865	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358866	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9379772	0.80[CEU][hapmap]
rs9379776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379777	0.94[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9393650	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs941428	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:25629000-25638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
4	chr6:25630800-25632200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:25631200-25632200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:25631600-25632200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:25632000-25634400	Weak transcription	HepG2	liver
8	chr6:25632000-25637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:25632000-25638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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