Variant report

Variant	rs7776417
Chromosome Location	chr6:25566022-25566023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25563781..25566387-chr6:25576690..25578785,2	K562	blood:
2	chr6:25565592..25568269-chr6:25573524..25575761,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1022492	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10946784	0.83[ASN][1000 genomes]
rs12663643	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665641	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs13192159	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13201652	0.81[CEU][hapmap]
rs13217586	0.81[CEU][hapmap]
rs2049967	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs2072848	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2072849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs212934	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs214053	0.80[JPT][hapmap]
rs2272824	0.86[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs3747526	0.86[CEU][hapmap]
rs3804120	0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804122	0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs3804123	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3804124	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804125	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804126	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804127	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3827505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs431659	0.80[JPT][hapmap]
rs6935799	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741329	0.85[CEU][hapmap]
rs7767930	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295665	0.93[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9356979	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9356980	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9356981	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9356983	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358860	0.84[JPT][hapmap];0.91[YRI][hapmap];0.85[ASN][1000 genomes]
rs9366625	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9379771	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs9379772	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9379776	0.81[CEU][hapmap]
rs9393648	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9393649	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393650	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
9	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
13	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:25554400-25567600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
16	chr6:25557200-25591400	Weak transcription	Ovary	ovary
17	chr6:25563400-25568000	Strong transcription	Primary T cells from cord blood	blood
18	chr6:25564200-25582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:25564400-25576800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:25565000-25579800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:25565200-25566400	Strong transcription	Aorta	Aorta
22	chr6:25565200-25566400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:25565400-25566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:25565400-25570000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:25565400-25583400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:25565600-25570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:25565800-25581400	Weak transcription	Fetal Intestine Large	intestine
28	chr6:25566000-25581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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