Variant report

Variant	rs6935799
Chromosome Location	chr6:25537384-25537385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25534152..25536641-chr6:25537227..25540141,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1022492	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946784	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663643	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665641	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13192159	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13201652	0.81[CEU][hapmap]
rs13217586	0.81[CEU][hapmap]
rs2049967	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs2072848	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2072849	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212934	0.83[JPT][hapmap]
rs214053	0.80[JPT][hapmap]
rs2272824	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs3747526	0.86[CEU][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3788992	0.81[AMR][1000 genomes]
rs3804120	0.93[CEU][hapmap];0.90[CHB][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804122	0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs3804123	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3804124	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804125	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804126	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804127	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3827505	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs431659	0.80[JPT][hapmap]
rs7738571	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739227	0.81[AMR][1000 genomes]
rs7741329	0.85[CEU][hapmap]
rs7767930	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776417	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9295665	0.93[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9356979	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9356980	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9356981	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9356983	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358860	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs9366625	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9379771	0.88[ASN][1000 genomes]
rs9379772	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9379776	0.81[CEU][hapmap]
rs9393648	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9393649	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393650	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25490400-25543000	Weak transcription	Hela-S3	cervix
3	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
4	chr6:25506600-25537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:25509800-25548600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:25514200-25542600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:25514400-25541600	Weak transcription	Colonic Mucosa	Colon
9	chr6:25514800-25537800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:25515000-25538600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:25516200-25547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
13	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
14	chr6:25516600-25539600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:25516600-25544000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:25516800-25545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:25516800-25606400	Weak transcription	Lung	lung
18	chr6:25517000-25542200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:25517400-25540200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:25517400-25542200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:25519000-25540000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:25519000-25540000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:25519800-25543200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:25519800-25556800	Weak transcription	Ovary	ovary
25	chr6:25521600-25541000	Weak transcription	HSMMtube	muscle
26	chr6:25521600-25541000	Weak transcription	NHEK	skin
27	chr6:25522200-25545400	Weak transcription	Small Intestine	intestine
28	chr6:25522400-25538600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:25522400-25588600	Weak transcription	HMEC	breast
30	chr6:25522600-25537400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:25522800-25540000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:25523000-25550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:25523200-25538000	Weak transcription	Thymus	Thymus
35	chr6:25523200-25541400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:25523400-25538400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:25523400-25544200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:25525000-25538600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:25525400-25538400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:25527800-25540400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:25529400-25538000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:25530600-25539000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:25530800-25537600	Weak transcription	Fetal Kidney	kidney
44	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
45	chr6:25531200-25538000	Weak transcription	Fetal Thymus	thymus
46	chr6:25533000-25541400	Strong transcription	Primary T cells from cord blood	blood
47	chr6:25533600-25539000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:25534400-25537800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:25534400-25538600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr6:25534600-25537600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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