The 2.0 version of rSNPBase

Variant report

Variant rs3804122
Chromosome Location chr6:25579846-25579847
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25471600-25597200 Weak transcription Gastric stomach
2 chr6:25516800-25606400 Weak transcription Lung lung
3 chr6:25522400-25588600 Weak transcription HMEC breast
4 chr6:25530800-25584200 Weak transcription Fetal Intestine Small intestine
5 chr6:25538600-25592800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr6:25539200-25582000 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr6:25540600-25580200 Weak transcription Fetal Thymus thymus
8 chr6:25541600-25584400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr6:25541600-25612000 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr6:25544000-25593600 Weak transcription Fetal Lung lung
11 chr6:25547200-25600600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr6:25556200-25618000 Weak transcription Primary B cells from cord blood blood
13 chr6:25557200-25591400 Weak transcription Ovary ovary
14 chr6:25564200-25582600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr6:25565400-25583400 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr6:25565800-25581400 Weak transcription Fetal Intestine Large intestine
17 chr6:25566000-25581400 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr6:25566400-25581000 Weak transcription Aorta Aorta
19 chr6:25566400-25581600 Weak transcription Duodenum Mucosa Duodenum
20 chr6:25568000-25581400 Weak transcription Primary T cells from cord blood blood
21 chr6:25571200-25581600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr6:25572000-25622200 Weak transcription HSMMtube muscle
23 chr6:25574200-25594200 Weak transcription H9 Cell Line embryonic stem cell
24 chr6:25575800-25580000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
25 chr6:25576600-25580400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr6:25577000-25590600 Weak transcription Brain Angular Gyrus brain
27 chr6:25577200-25592000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr6:25577200-25594200 Weak transcription Brain Substantia Nigra brain
29 chr6:25577200-25603400 Weak transcription Fetal Brain Female brain
30 chr6:25577200-25624800 Weak transcription Adipose Nuclei Adipose
31 chr6:25577400-25581400 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr6:25577400-25582000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr6:25577600-25581200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr6:25577600-25597200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:25578600-25580600 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr6:25578600-25581200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr6:25578600-25583200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr6:25579000-25581200 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr6:25579200-25604600 Weak transcription Fetal Brain Male brain
40 chr6:25579600-25580400 Enhancers Primary T helper naive cells fromperipheralblood blood
41 chr6:25579600-25588600 Weak transcription Primary hematopoietic stem cells blood
42 chr6:25579600-25593200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr6:25579800-25580200 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr6:25579800-25580200 Enhancers GM12878-XiMat blood
45 chr6:25579800-25580400 Enhancers Fetal Kidney kidney
46 chr6:25579800-25581000 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015