Variant report

Variant	rs1022492
Chromosome Location	chr6:25579176-25579177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25577909..25579750-chr6:26022470..26024866,2	K562	blood:
2	chr6:25572907..25575782-chr6:25577109..25579936,2	MCF-7	breast:
3	chr6:25279330..25280842-chr6:25577560..25579803,2	MCF-7	breast:
4	chr6:25577394..25580689-chr6:25580776..25585685,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079691	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10946784	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12663643	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12665641	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13192159	0.93[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13201652	0.80[CEU][hapmap]
rs13217586	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs2049967	0.80[CEU][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.87[TSI][hapmap]
rs2072848	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2072849	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs212934	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2205935	0.82[GIH][hapmap];0.84[TSI][hapmap]
rs2272824	0.86[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs3747526	0.86[CEU][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs3804120	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804122	0.85[ASN][1000 genomes]
rs3804123	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs3804124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804125	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804127	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3827505	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935799	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939153	0.82[GIH][hapmap]
rs7738571	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7740510	0.91[GIH][hapmap]
rs7741329	0.84[CEU][hapmap]
rs7767930	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7776417	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9295665	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348683	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9356979	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9356980	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356981	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356983	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358860	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9366625	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9379771	0.82[ASN][1000 genomes]
rs9379772	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9379776	0.80[CEU][hapmap]
rs9393648	0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes]
rs9393649	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9393650	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
8	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
11	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:25557200-25591400	Weak transcription	Ovary	ovary
14	chr6:25564200-25582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:25565000-25579800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:25565400-25583400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:25565800-25581400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:25566000-25581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:25566400-25581000	Weak transcription	Aorta	Aorta
20	chr6:25566400-25581600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:25568000-25581400	Weak transcription	Primary T cells from cord blood	blood
22	chr6:25571200-25581600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
24	chr6:25574200-25594200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:25575800-25580000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:25576600-25580400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:25577000-25590600	Weak transcription	Brain Angular Gyrus	brain
28	chr6:25577200-25592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:25577200-25594200	Weak transcription	Brain Substantia Nigra	brain
30	chr6:25577200-25603400	Weak transcription	Fetal Brain Female	brain
31	chr6:25577200-25624800	Weak transcription	Adipose Nuclei	Adipose
32	chr6:25577400-25581400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:25577400-25582000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:25577600-25581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:25577600-25597200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:25578200-25579200	Enhancers	Fetal Brain Male	brain
37	chr6:25578600-25580600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:25578600-25581200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:25578600-25583200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:25579000-25581200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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