The 2.0 version of rSNPBase

Variant report

Variant rs2088956
Chromosome Location chr1:45520908-45520909
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:45481200-45527400 Weak transcription Left Ventricle heart
3 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:45497400-45525400 Weak transcription Gastric stomach
5 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
6 chr1:45501800-45521200 Weak transcription Brain Hippocampus Middle brain
7 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
8 chr1:45502000-45523800 Weak transcription Brain Cingulate Gyrus brain
9 chr1:45502400-45523000 Weak transcription Aorta Aorta
10 chr1:45504200-45524200 Weak transcription Esophagus oesophagus
11 chr1:45504400-45524000 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:45505000-45526000 Weak transcription Fetal Stomach stomach
13 chr1:45507600-45527000 Weak transcription Fetal Kidney kidney
14 chr1:45509000-45523000 Weak transcription Brain Angular Gyrus brain
15 chr1:45509000-45523800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:45509000-45524000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:45509200-45521000 Weak transcription Brain Anterior Caudate brain
18 chr1:45509200-45522400 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:45509600-45522400 Weak transcription Stomach Smooth Muscle stomach
20 chr1:45509600-45526200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr1:45511200-45521400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:45511400-45521400 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:45512400-45523800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:45513600-45525400 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:45513600-45526200 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr1:45517000-45521200 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:45517000-45522800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:45517000-45525600 Weak transcription Small Intestine intestine
29 chr1:45517200-45521400 Weak transcription Brain Germinal Matrix brain
30 chr1:45517400-45522600 Weak transcription Brain Substantia Nigra brain
31 chr1:45517400-45522600 Weak transcription Fetal Brain Female brain
32 chr1:45517400-45526200 Weak transcription Primary hematopoietic stem cells blood
33 chr1:45517600-45521000 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:45517600-45522600 Weak transcription Duodenum Mucosa Duodenum
35 chr1:45517600-45523400 Weak transcription Fetal Intestine Large intestine
36 chr1:45517600-45526800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:45517800-45525600 Weak transcription Primary T cells fromperipheralblood blood
38 chr1:45519800-45521200 Weak transcription HepG2 liver
39 chr1:45519800-45522400 Weak transcription GM12878-XiMat blood
40 chr1:45520000-45521200 Weak transcription Ovary ovary
41 chr1:45520000-45521400 Strong transcription Fetal Intestine Small intestine
42 chr1:45520400-45529200 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015