The 2.0 version of rSNPBase

Variant report

Variant rs6688318
Chromosome Location chr1:45513552-45513553
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:45481200-45527400 Weak transcription Left Ventricle heart
3 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:45491800-45516400 Weak transcription Spleen Spleen
5 chr1:45497400-45525400 Weak transcription Gastric stomach
6 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
7 chr1:45499200-45516200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr1:45500400-45516600 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:45501400-45516600 Weak transcription Small Intestine intestine
10 chr1:45501800-45516200 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:45501800-45521200 Weak transcription Brain Hippocampus Middle brain
12 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
13 chr1:45502000-45523800 Weak transcription Brain Cingulate Gyrus brain
14 chr1:45502400-45523000 Weak transcription Aorta Aorta
15 chr1:45504200-45524200 Weak transcription Esophagus oesophagus
16 chr1:45504400-45524000 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:45504800-45516400 Weak transcription Fetal Intestine Large intestine
18 chr1:45505000-45526000 Weak transcription Fetal Stomach stomach
19 chr1:45505200-45514600 Weak transcription Fetal Intestine Small intestine
20 chr1:45507600-45527000 Weak transcription Fetal Kidney kidney
21 chr1:45508800-45516200 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:45509000-45523000 Weak transcription Brain Angular Gyrus brain
23 chr1:45509000-45523800 Weak transcription Brain Inferior Temporal Lobe brain
24 chr1:45509000-45524000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:45509200-45515400 Weak transcription Brain Substantia Nigra brain
26 chr1:45509200-45521000 Weak transcription Brain Anterior Caudate brain
27 chr1:45509200-45522400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:45509600-45514400 Weak transcription HepG2 liver
29 chr1:45509600-45516200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:45509600-45516400 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr1:45509600-45522400 Weak transcription Stomach Smooth Muscle stomach
32 chr1:45509600-45526200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:45510000-45516000 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:45511200-45521400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr1:45511400-45513600 Strong transcription Ovary ovary
36 chr1:45511400-45521400 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:45512000-45514800 Weak transcription Brain Germinal Matrix brain
38 chr1:45512200-45513600 Strong transcription Duodenum Mucosa Duodenum
39 chr1:45512400-45523800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:45512800-45513600 Enhancers Skeletal Muscle Male skeletal muscle
41 chr1:45512800-45513600 Enhancers Skeletal Muscle Female skeletal muscle
42 chr1:45513200-45517400 Strong transcription Fetal Brain Female brain

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Last update: Aug 31, 2015