The 2.0 version of rSNPBase

Variant report

Variant rs3738246
Chromosome Location chr1:45524213-45524214
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:45481200-45527400 Weak transcription Left Ventricle heart
3 chr1:45497400-45525400 Weak transcription Gastric stomach
4 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
5 chr1:45501800-45527000 Weak transcription Fetal Brain Male brain
6 chr1:45505000-45526000 Weak transcription Fetal Stomach stomach
7 chr1:45507600-45527000 Weak transcription Fetal Kidney kidney
8 chr1:45509600-45526200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr1:45513600-45525400 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:45513600-45526200 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:45517000-45525600 Weak transcription Small Intestine intestine
12 chr1:45517400-45526200 Weak transcription Primary hematopoietic stem cells blood
13 chr1:45517600-45526800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:45517800-45525600 Weak transcription Primary T cells fromperipheralblood blood
15 chr1:45520400-45529200 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr1:45521200-45525800 Strong transcription Breast Myoepithelial Primary Cells Breast
17 chr1:45521200-45525800 Strong transcription HepG2 liver
18 chr1:45521200-45526600 Strong transcription Ovary ovary
19 chr1:45521400-45525800 Strong transcription Rectal Mucosa Donor 29 rectum
20 chr1:45521400-45526000 Strong transcription Brain Germinal Matrix brain
21 chr1:45521400-45527400 Weak transcription Fetal Intestine Small intestine
22 chr1:45522200-45524800 Strong transcription Brain Anterior Caudate brain
23 chr1:45522400-45524800 Strong transcription Stomach Smooth Muscle stomach
24 chr1:45522600-45524600 Strong transcription Brain Substantia Nigra brain
25 chr1:45522600-45524600 Strong transcription Duodenum Mucosa Duodenum
26 chr1:45522600-45525800 Strong transcription Brain Hippocampus Middle brain
27 chr1:45522600-45526000 Strong transcription Fetal Brain Female brain
28 chr1:45522800-45524400 Strong transcription Sigmoid Colon Sigmoid Colon
29 chr1:45523000-45524600 Strong transcription Aorta Aorta
30 chr1:45523000-45525200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:45523000-45525200 Strong transcription Brain Angular Gyrus brain
32 chr1:45523000-45525400 Weak transcription Adipose Nuclei Adipose
33 chr1:45523400-45527400 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:45523600-45526200 Weak transcription Colonic Mucosa Colon
35 chr1:45523600-45526600 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr1:45523600-45527400 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:45523800-45524600 Strong transcription Cortex derived primary cultured neurospheres brain
38 chr1:45523800-45524800 Strong transcription Fetal Intestine Large intestine
39 chr1:45523800-45525800 Strong transcription Brain Cingulate Gyrus brain
40 chr1:45523800-45525800 Strong transcription Brain Inferior Temporal Lobe brain
41 chr1:45523800-45526000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:45524000-45524400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr1:45524000-45524800 Strong transcription Rectal Mucosa Donor 31 rectum
44 chr1:45524200-45524400 Enhancers Esophagus oesophagus
45 chr1:45524200-45524400 Bivalent Enhancer K562 blood
46 chr1:45524200-45524600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015