Variant report

Variant	rs2101647
Chromosome Location	chr3:151138399-151138400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10935848	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2087728	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2172250	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3975409	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440741	0.88[ASN][1000 genomes]
rs6440743	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7611956	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7652056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs937119	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs937120	0.90[AMR][1000 genomes]
rs937127	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840738	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878370	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:151104200-151139600	Weak transcription	Dnd41	blood
6	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:151112800-151143400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:151113200-151142600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:151113400-151143600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:151117600-151142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:151119000-151142600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:151121800-151138400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:151122800-151139800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:151123200-151139600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:151124600-151139200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:151126800-151140200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:151126800-151148600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:151127200-151149200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:151129400-151142400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:151130800-151142600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:151132000-151148800	Weak transcription	Fetal Intestine Small	intestine
23	chr3:151132400-151142400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:151133200-151142600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:151133400-151148600	Weak transcription	Brain Germinal Matrix	brain
26	chr3:151133400-151154800	Weak transcription	Fetal Brain Male	brain
27	chr3:151133600-151142600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:151133600-151151800	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:151135000-151152200	Weak transcription	Fetal Kidney	kidney
30	chr3:151135200-151142600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:151135600-151139000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr3:151136000-151139800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:151137000-151139000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:151137200-151149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:151137600-151139400	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links