Variant report

Variant	rs937120
Chromosome Location	chr3:151141978-151141979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151141199..151144140-chr3:151145899..151147638,2	K562	blood:
2	chr3:151140606..151143540-chr3:151403707..151406699,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10935848	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2087728	0.92[AMR][1000 genomes]
rs2101647	0.90[AMR][1000 genomes]
rs2172250	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3975409	0.92[AMR][1000 genomes]
rs6440741	0.84[ASN][1000 genomes]
rs6440743	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7611956	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7652056	0.90[AMR][1000 genomes]
rs937119	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs937127	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9840738	0.88[AMR][1000 genomes]
rs9878370	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:151112800-151143400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:151113200-151142600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:151113400-151143600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:151117600-151142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:151119000-151142600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:151126800-151148600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:151127200-151149200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:151129400-151142400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:151130800-151142600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:151132000-151148800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:151132400-151142400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:151133200-151142600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:151133400-151148600	Weak transcription	Brain Germinal Matrix	brain
20	chr3:151133400-151154800	Weak transcription	Fetal Brain Male	brain
21	chr3:151133600-151142600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:151133600-151151800	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:151135000-151152200	Weak transcription	Fetal Kidney	kidney
24	chr3:151135200-151142600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:151137200-151149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:151138400-151144600	Weak transcription	Ovary	ovary
27	chr3:151139000-151142400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:151139000-151143600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:151139000-151147000	Weak transcription	Aorta	Aorta
30	chr3:151139400-151146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:151140200-151142400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:151140200-151143200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:151140200-151144000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:151140200-151144000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:151140200-151152800	Weak transcription	Fetal Thymus	thymus
36	chr3:151140200-151154400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:151140200-151157000	Weak transcription	Dnd41	blood
38	chr3:151140400-151144000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr3:151140400-151146400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:151140800-151142800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:151141200-151142000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:151141200-151142600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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