Variant report

Variant	rs6440743
Chromosome Location	chr3:151146151-151146152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151141199..151144140-chr3:151145899..151147638,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10935848	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088575	0.81[ASN][1000 genomes]
rs2087728	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2101647	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2172250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3975409	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6440741	0.97[ASN][1000 genomes]
rs6792496	0.90[ASN][1000 genomes]
rs7611956	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7652056	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs937119	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs937120	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs937127	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840738	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873499	0.81[ASN][1000 genomes]
rs9878370	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:151126800-151148600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:151127200-151149200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:151132000-151148800	Weak transcription	Fetal Intestine Small	intestine
8	chr3:151133400-151148600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:151133400-151154800	Weak transcription	Fetal Brain Male	brain
10	chr3:151133600-151151800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:151135000-151152200	Weak transcription	Fetal Kidney	kidney
12	chr3:151137200-151149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:151139000-151147000	Weak transcription	Aorta	Aorta
14	chr3:151139400-151146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:151140200-151152800	Weak transcription	Fetal Thymus	thymus
16	chr3:151140200-151154400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:151140200-151157000	Weak transcription	Dnd41	blood
18	chr3:151140400-151146400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:151142800-151146800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:151143000-151149000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:151143000-151151600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:151143000-151151600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:151143200-151152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:151143600-151149600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:151143800-151148600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:151143800-151148600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:151143800-151148800	Weak transcription	NH-A	brain
28	chr3:151143800-151149400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:151143800-151150400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:151143800-151154600	Weak transcription	Fetal Lung	lung
31	chr3:151144000-151148600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:151144200-151148400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:151144400-151146200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:151144400-151146400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:151144400-151148000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:151144400-151149000	Weak transcription	NHLF	lung
37	chr3:151144400-151149600	Weak transcription	NHDF-Ad	bronchial
38	chr3:151144400-151149800	Weak transcription	GM12878-XiMat	blood
39	chr3:151144400-151150200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:151144400-151150200	Weak transcription	A549	lung
41	chr3:151144400-151152400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:151144400-151153200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:151144800-151155000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:151145000-151148200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:151145000-151149600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:151145000-151154600	Weak transcription	Ovary	ovary

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