Variant report

Variant	rs937127
Chromosome Location	chr3:151156687-151156688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151156231..151158175-chr3:151161279..151163172,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10935848	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13088575	0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2087728	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2101647	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2172250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3975409	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679830	0.81[ASN][1000 genomes]
rs6440741	0.89[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6440743	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792496	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7611956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652056	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs937119	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs937120	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9840738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9873499	0.86[ASN][1000 genomes]
rs9878370	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:151140200-151157000	Weak transcription	Dnd41	blood
3	chr3:151147200-151157800	Weak transcription	Aorta	Aorta
4	chr3:151148400-151161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:151148800-151162400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:151150000-151156800	Weak transcription	Pancreas	Pancrea
7	chr3:151150400-151157200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:151150400-151158200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:151151200-151158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:151153200-151157200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:151153200-151157600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:151153200-151158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:151153400-151157400	Weak transcription	A549	lung
14	chr3:151153400-151162600	Weak transcription	Osteobl	bone
15	chr3:151153600-151158400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:151155000-151157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:151155000-151162800	Weak transcription	NHLF	lung
18	chr3:151155200-151157200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:151156000-151157000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:151156000-151157600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:151156000-151163200	Weak transcription	Fetal Brain Male	brain
22	chr3:151156200-151161400	Weak transcription	Ovary	ovary
23	chr3:151156400-151157200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links