Variant report

Variant	rs6792496
Chromosome Location	chr3:151159321-151159322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:151159078-151159332	HepG2	liver:	n/a	chr3:151159162-151159176 chr3:151159164-151159175 chr3:151159164-151159175 chr3:151159163-151159174 chr3:151159159-151159174 chr3:151159163-151159174
2	POLR2A	chr3:151159316-151159388	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151154113..151155918-chr3:151159230..151162074,2	K562	blood:

Variant related genes	Relation type
IGSF10	TF binding region
ENSG00000152580	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935848	0.90[ASN][1000 genomes]
rs13088575	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087728	0.82[ASN][1000 genomes]
rs2172250	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs3975409	0.82[ASN][1000 genomes]
rs4679830	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680440	0.88[CEU][hapmap];0.81[MEX][hapmap];0.82[EUR][1000 genomes]
rs4680442	0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4680443	0.88[CEU][hapmap];0.85[GIH][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs6440741	0.94[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6440743	0.90[ASN][1000 genomes]
rs6769246	0.80[EUR][1000 genomes]
rs7610769	0.84[EUR][1000 genomes]
rs7611956	0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7621591	0.88[CEU][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.82[EUR][1000 genomes]
rs7652056	0.80[ASN][1000 genomes]
rs9289838	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs937119	0.87[ASN][1000 genomes]
rs937127	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9812989	0.82[EUR][1000 genomes]
rs9840738	0.92[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs9871952	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9873499	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9877298	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9878370	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:151148400-151161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:151148800-151162400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:151153400-151162600	Weak transcription	Osteobl	bone
5	chr3:151155000-151162800	Weak transcription	NHLF	lung
6	chr3:151156000-151163200	Weak transcription	Fetal Brain Male	brain
7	chr3:151156200-151161400	Weak transcription	Ovary	ovary
8	chr3:151157600-151160000	Weak transcription	Fetal Lung	lung
9	chr3:151157600-151162600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:151157800-151162800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:151158000-151160800	Weak transcription	Aorta	Aorta

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