Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024515	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12668286	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1405881	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1527765	1.00[CEU][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs1581638	1.00[CEU][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs17607448	1.00[CEU][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs17675638	0.88[EUR][1000 genomes]
rs1830249	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2189815	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2237543	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs2237545	1.00[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs2282958	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299209	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2299211	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2373268	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56227688	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57843796	0.89[EUR][1000 genomes]
rs60097039	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73704989	0.89[EUR][1000 genomes]
rs7794411	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1017470	chr7:86221308-86263909	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv526622	chr7:86222259-86260816	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2764034	chr7:86227204-86245054	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86229600-86230800	Enhancers	Brain Hippocampus Middle	brain

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