Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024515	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12668286	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1405881	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527765	0.95[EUR][1000 genomes]
rs1581638	0.95[EUR][1000 genomes]
rs17607448	0.95[EUR][1000 genomes]
rs17675638	0.94[EUR][1000 genomes]
rs1830249	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2102384	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2189815	0.95[EUR][1000 genomes]
rs2237543	0.95[EUR][1000 genomes]
rs2237545	0.95[EUR][1000 genomes]
rs2282958	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2299209	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299211	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2373268	0.87[EUR][1000 genomes]
rs56227688	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57843796	0.95[EUR][1000 genomes]
rs73704989	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7794411	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1017470	chr7:86221308-86263909	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv526622	chr7:86222259-86260816	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86251800-86252600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:86252200-86252600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:86252200-86252600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:86252200-86253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:86252400-86252600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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