Variant report

Variant	rs2282958
Chromosome Location	chr7:86280851-86280852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1405881	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1527765	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1581638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17607448	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17675638	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1830249	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2102384	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2189815	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299211	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373268	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56227688	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57843796	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60097039	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73704989	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7794411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
2	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:86277800-86282400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:86278400-86281000	Enhancers	Brain Anterior Caudate	brain
5	chr7:86278400-86283000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:86278400-86283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:86279400-86281000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:86279400-86282400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:86279400-86282600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:86279800-86281400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:86280400-86281000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:86280400-86281000	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:86280400-86282600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:86280400-86283200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:86280600-86282000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:86280600-86282200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:86280600-86283200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:86280600-86283200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:86280600-86283400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:86280600-86289400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:86280800-86282600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:86280800-86283200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:86280800-86283200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:86280800-86283200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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