Variant report

Variant	rs2104334
Chromosome Location	chr6:121843129-121843130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1005801	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10499113	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359233	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143299	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143300	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946575	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913516	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7454289	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320820	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385200	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398638	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401409	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:121841200-121845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:121841600-121843600	Enhancers	NHDF-Ad	bronchial
6	chr6:121841600-121843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:121841800-121843600	Enhancers	Osteobl	bone
8	chr6:121841800-121844200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:121842000-121843400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:121842000-121843400	Enhancers	NHLF	lung
11	chr6:121842000-121843800	Weak transcription	Aorta	Aorta
12	chr6:121842000-121844200	Enhancers	HMEC	breast
13	chr6:121842200-121843400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:121842200-121843400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:121842200-121843400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:121842200-121843400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:121842200-121843400	Flanking Active TSS	HUVEC	blood vessel
18	chr6:121842200-121844200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:121842200-121844200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:121842200-121844800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:121842200-121844800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:121842200-121847400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:121842400-121843400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:121842400-121843400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:121842400-121843400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:121842400-121843400	Flanking Active TSS	NH-A	brain
27	chr6:121842400-121843600	Weak transcription	Fetal Stomach	stomach
28	chr6:121842400-121843600	Enhancers	HSMMtube	muscle
29	chr6:121842400-121844800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:121842600-121843200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:121842600-121843200	Enhancers	A549	lung
32	chr6:121842600-121843600	Enhancers	Colon Smooth Muscle	Colon
33	chr6:121842600-121844600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:121842600-121844800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:121842600-121845000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:121842800-121843200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:121842800-121843200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:121842800-121843600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:121842800-121843600	Enhancers	Ovary	ovary
40	chr6:121842800-121844000	Enhancers	Hela-S3	cervix
41	chr6:121842800-121844200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:121842800-121844200	Enhancers	NHEK	skin
43	chr6:121842800-121844800	Enhancers	HSMM	muscle
44	chr6:121842800-121845400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:121843000-121843600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:121843000-121843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:121843000-121844400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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