Variant report

Variant	rs9385200
Chromosome Location	chr6:121845501-121845502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1005801	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10499113	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202477	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104334	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143300	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946575	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913516	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6928474	0.81[EUR][1000 genomes]
rs7454289	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320820	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398638	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401409	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121842200-121847400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:121843400-121845600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:121843400-121845800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:121844000-121847400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:121844400-121845600	Enhancers	NH-A	brain
6	chr6:121844400-121847000	Weak transcription	Aorta	Aorta
7	chr6:121844600-121845800	Enhancers	HUVEC	blood vessel
8	chr6:121844800-121845600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:121845000-121847000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:121845000-121847400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:121845200-121845600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:121845200-121847400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:121845200-121847400	Weak transcription	Ovary	ovary
14	chr6:121845400-121847200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:121845400-121847200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:121845400-121847200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:121845400-121847400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:121845400-121850800	Weak transcription	Osteobl	bone
19	chr6:121845400-121854200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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