Variant report

Variant	rs9401409
Chromosome Location	chr6:121829909-121829910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1005801	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10499113	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202477	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359233	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886250	0.89[AFR][1000 genomes]
rs2104334	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143299	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143300	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946575	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913516	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928474	0.80[EUR][1000 genomes]
rs7454289	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320820	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385200	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398638	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121826000-121830000	Weak transcription	HUVEC	blood vessel
2	chr6:121826800-121831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:121827600-121830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121827800-121830000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:121828400-121830800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:121828400-121831600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:121828400-121831800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:121828600-121831000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:121828600-121831200	Weak transcription	HMEC	breast
10	chr6:121828600-121831600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:121828600-121831600	Weak transcription	NH-A	brain
12	chr6:121828600-121831800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:121828600-121831800	Weak transcription	A549	lung
14	chr6:121828600-121841200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:121829200-121836600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:121829400-121830400	Weak transcription	Osteobl	bone
17	chr6:121829400-121831800	Weak transcription	Hela-S3	cervix
18	chr6:121829800-121830600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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