Variant report

Variant	rs6913516
Chromosome Location	chr6:121828351-121828352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1005801	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10499113	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202477	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359233	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886250	0.98[AFR][1000 genomes]
rs2104334	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143299	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143300	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946575	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928725	0.81[CHB][hapmap]
rs7454289	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320820	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385200	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398638	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401409	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121824200-121829400	Enhancers	Hela-S3	cervix
2	chr6:121826000-121830000	Weak transcription	HUVEC	blood vessel
3	chr6:121826600-121828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:121826800-121831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:121827400-121828400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:121827600-121828600	Enhancers	A549	lung
7	chr6:121827600-121830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:121827800-121828400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:121827800-121828600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:121827800-121828600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:121827800-121828600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:121827800-121828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:121827800-121828600	Enhancers	HMEC	breast
14	chr6:121827800-121828800	Enhancers	Colon Smooth Muscle	Colon
15	chr6:121827800-121829200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:121827800-121829400	Enhancers	Fetal Intestine Large	intestine
17	chr6:121827800-121829400	Enhancers	Osteobl	bone
18	chr6:121827800-121830000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:121828000-121828400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:121828000-121828600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:121828000-121828600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:121828000-121828600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:121828000-121828600	Enhancers	NH-A	brain
24	chr6:121828000-121828800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:121828200-121828400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:121828200-121828600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr6:121828200-121829000	Enhancers	Primary monocytes fromperipheralblood	blood

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