Variant report

Variant	rs2104582
Chromosome Location	chr13:90345625-90345626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1327324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1327325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1327337	1.00[AMR][1000 genomes]
rs1409912	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1571191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1831073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2348972	1.00[AMR][1000 genomes]
rs2349550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs394197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7139777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338179	1.00[AMR][1000 genomes]
rs9301608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9301614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv456059	chr13:90276827-90355675	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv562640	chr13:90276827-90355675	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv456060	chr13:90309159-90392614	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv562641	chr13:90309159-90392614	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv900866	chr13:90325420-90432585	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900867	chr13:90338898-90432585	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90342400-90346800	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:90342400-90347600	Weak transcription	Brain Substantia Nigra	brain
3	chr13:90342600-90347600	Weak transcription	Brain Anterior Caudate	brain
4	chr13:90345600-90345800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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