Variant report

Variant	rs2128105
Chromosome Location	chr8:68519685-68519686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68518664..68520365-chr8:68551960..68554902,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10085934	0.86[ASN][1000 genomes]
rs10086148	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs10091234	0.86[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs10808754	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs10808755	0.87[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11781284	0.86[ASN][1000 genomes]
rs11997518	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.91[ASN][1000 genomes]
rs12056769	0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs12679715	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs12680940	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12681928	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs12682475	0.86[ASN][1000 genomes]
rs13265827	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs13266610	0.85[ASN][1000 genomes]
rs13268227	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs13277276	0.91[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1503370	0.86[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs1545824	0.86[CHB][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap]
rs1809438	0.86[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs2086540	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34765332	0.85[ASN][1000 genomes]
rs379025	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs392092	0.86[CHB][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.82[ASN][1000 genomes]
rs406796	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs408802	0.84[ASN][1000 genomes]
rs421352	0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs448546	0.88[ASN][1000 genomes]
rs4737846	0.95[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs5008275	0.86[ASN][1000 genomes]
rs610372	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6472320	0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7002461	0.87[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7005868	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7007047	0.82[ASN][1000 genomes]
rs7007331	0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs729407	0.86[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs729408	0.83[ASN][1000 genomes]
rs7814309	0.82[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7818863	0.92[ASN][1000 genomes]
rs7832751	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7836691	0.91[ASN][1000 genomes]
rs900116	0.83[ASN][1000 genomes]
rs900117	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs900118	0.83[ASN][1000 genomes]
rs900119	0.86[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs900899	0.95[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9657034	0.82[CHB][hapmap]
rs9657086	0.82[CHB][hapmap]
rs9657087	0.81[CHB][hapmap]
rs9772671	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68514400-68520600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:68516200-68539400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:68517000-68522400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:68517000-68524800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:68519200-68520200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:68519600-68525400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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