Variant report

Variant	rs392092
Chromosome Location	chr8:68479877-68479878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:68479784-68480212	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000254253	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10085934	0.95[ASN][1000 genomes]
rs10086148	0.87[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs10091234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808754	0.87[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs10808755	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11781284	0.94[ASN][1000 genomes]
rs11997518	0.86[CEU][hapmap];0.91[CHB][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056769	0.87[CHB][hapmap];0.80[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12679715	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12680940	0.83[ASN][1000 genomes]
rs12681928	0.87[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs12682475	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13265827	0.87[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs13266610	0.94[ASN][1000 genomes]
rs13268227	0.87[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs13277276	0.87[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503370	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1545824	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs1809438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2086540	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2128105	0.86[CHB][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.82[ASN][1000 genomes]
rs34765332	0.94[ASN][1000 genomes]
rs36026014	0.81[ASN][1000 genomes]
rs379025	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs406796	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs408802	0.86[ASN][1000 genomes]
rs421352	0.87[CHB][hapmap];0.80[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.80[ASN][1000 genomes]
rs448546	0.94[ASN][1000 genomes]
rs4737846	0.82[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs5008275	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs610372	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6472320	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7002461	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7005868	0.95[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs7007047	1.00[ASN][1000 genomes]
rs7007331	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs729407	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729408	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814309	0.80[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes]
rs7814387	0.84[ASN][1000 genomes]
rs7818863	0.90[ASN][1000 genomes]
rs7832751	0.82[CHB][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs7836691	0.89[ASN][1000 genomes]
rs900116	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs900117	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs900118	0.99[ASN][1000 genomes]
rs900119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs900899	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9657034	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9657086	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9657087	0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs9657088	0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9772671	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68470400-68482200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:68473200-68480000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:68478000-68480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:68478400-68481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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