Variant report

Variant	rs7814387
Chromosome Location	chr8:68464966-68464967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085934	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10086148	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10091234	0.83[ASN][1000 genomes]
rs10808754	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12056769	0.80[ASN][1000 genomes]
rs12679715	0.85[ASN][1000 genomes]
rs12681928	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12682475	0.83[ASN][1000 genomes]
rs13265827	0.85[ASN][1000 genomes]
rs13266610	0.85[ASN][1000 genomes]
rs13268227	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13277276	0.80[ASN][1000 genomes]
rs1503370	0.83[ASN][1000 genomes]
rs1809438	0.83[ASN][1000 genomes]
rs34765332	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36026014	0.87[ASN][1000 genomes]
rs392092	0.84[ASN][1000 genomes]
rs448546	0.82[ASN][1000 genomes]
rs6472320	0.83[ASN][1000 genomes]
rs7007047	0.84[ASN][1000 genomes]
rs7007331	0.83[ASN][1000 genomes]
rs729407	0.83[ASN][1000 genomes]
rs729408	0.83[ASN][1000 genomes]
rs900116	0.83[ASN][1000 genomes]
rs900118	0.83[ASN][1000 genomes]
rs900119	0.83[ASN][1000 genomes]
rs900899	0.82[ASN][1000 genomes]
rs9657034	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9657086	0.88[ASN][1000 genomes]
rs9657087	0.86[ASN][1000 genomes]
rs9657088	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68457200-68469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:68458400-68468600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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