Variant report

Variant	rs900119
Chromosome Location	chr8:68492433-68492434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10085934	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10086148	0.88[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10091234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10808754	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808755	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11781284	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11997518	0.91[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs12056769	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs12679715	0.89[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12680940	0.84[ASN][1000 genomes]
rs12681928	0.88[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682475	0.94[ASN][1000 genomes]
rs13265827	0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13266610	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13268227	0.88[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13277276	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs1503370	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1809438	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2086540	0.82[ASN][1000 genomes]
rs2128105	0.86[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs34765332	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs379025	0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs392092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs406796	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs408802	0.87[ASN][1000 genomes]
rs421352	0.87[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs448546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4737846	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs5008275	0.94[ASN][1000 genomes]
rs610372	0.84[ASN][1000 genomes]
rs6472320	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002461	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7005868	0.83[CHB][hapmap]
rs7007047	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7007331	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs729408	1.00[ASN][1000 genomes]
rs7814309	0.80[JPT][hapmap]
rs7814387	0.83[ASN][1000 genomes]
rs7818863	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832751	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs7836691	0.90[ASN][1000 genomes]
rs900116	1.00[ASN][1000 genomes]
rs900117	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs900118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900899	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs9657034	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9657086	0.96[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9657087	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9657088	0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9772671	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68490600-68493400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:68491400-68493400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr8:68491800-68493000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:68491800-68493000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr8:68491800-68493200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:68491800-68493200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:68492000-68492600	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:68492000-68492600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:68492000-68493000	Enhancers	Primary hematopoietic stem cells	blood
10	chr8:68492000-68493000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:68492000-68493200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:68492000-68493200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:68492000-68493200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:68492200-68492600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:68492200-68492600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:68492200-68492600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:68492200-68492800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:68492200-68492800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:68492200-68492800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:68492200-68492800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:68492200-68493000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:68492200-68493200	Enhancers	Primary T cells from cord blood	blood
23	chr8:68492200-68493200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr8:68492200-68493400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr8:68492400-68493200	Enhancers	GM12878-XiMat	blood
26	chr8:68492400-68493600	Enhancers	Dnd41	blood

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