Variant report

Variant	rs12682475
Chromosome Location	chr8:68478964-68478965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68476861..68478978-chr8:68481849..68483668,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10085934	1.00[ASN][1000 genomes]
rs10086148	1.00[ASN][1000 genomes]
rs10091234	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10808754	1.00[ASN][1000 genomes]
rs10808755	0.89[ASN][1000 genomes]
rs11781284	0.89[ASN][1000 genomes]
rs11997518	0.95[ASN][1000 genomes]
rs12056769	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12679715	0.99[ASN][1000 genomes]
rs12681928	0.99[ASN][1000 genomes]
rs13265827	0.99[ASN][1000 genomes]
rs13266610	0.99[ASN][1000 genomes]
rs13268227	0.99[ASN][1000 genomes]
rs13277276	0.94[ASN][1000 genomes]
rs1503370	0.94[ASN][1000 genomes]
rs1809438	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2128105	0.86[ASN][1000 genomes]
rs34765332	0.99[ASN][1000 genomes]
rs379025	0.81[ASN][1000 genomes]
rs392092	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs408802	0.81[ASN][1000 genomes]
rs448546	0.99[ASN][1000 genomes]
rs5008275	0.90[ASN][1000 genomes]
rs6472320	0.99[ASN][1000 genomes]
rs7002461	0.89[ASN][1000 genomes]
rs7007047	0.95[ASN][1000 genomes]
rs7007331	1.00[ASN][1000 genomes]
rs729407	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729408	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7814309	0.82[ASN][1000 genomes]
rs7814387	0.83[ASN][1000 genomes]
rs7818863	0.94[ASN][1000 genomes]
rs7832751	0.82[ASN][1000 genomes]
rs7836691	0.94[ASN][1000 genomes]
rs900116	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs900118	0.94[ASN][1000 genomes]
rs900119	0.94[ASN][1000 genomes]
rs900899	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9657034	0.92[ASN][1000 genomes]
rs9657086	0.91[ASN][1000 genomes]
rs9657087	0.93[ASN][1000 genomes]
rs9657088	0.92[ASN][1000 genomes]
rs9772671	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68470400-68482200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:68473200-68480000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:68478000-68480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:68478400-68481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:68478800-68479400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links