Variant report

Variant	rs2132862
Chromosome Location	chr8:104085042-104085043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104079134..104080797-chr8:104084707..104086213,2	MCF-7	breast:
2	chr8:104083769..104086163-chr8:104096355..104099034,2	K562	blood:
3	chr8:104083655..104086028-chr8:104086972..104089914,2	MCF-7	breast:
4	chr8:103874579..103878477-chr8:104084832..104088303,4	MCF-7	breast:
5	chr8:104082607..104085151-chr8:104426988..104428964,2	MCF-7	breast:
6	chr8:103922274..103923798-chr8:104084913..104086435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000164933	Chromatin interaction
ENSG00000253320	Chromatin interaction
ENSG00000253795	Chromatin interaction
ENSG00000164934	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1159227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398272	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512350	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512352	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512353	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1512354	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047374	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132861	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453993	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454041	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454042	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454047	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458282	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458292	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458294	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515193	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515196	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515202	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2935587	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019160	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019164	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019165	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133430	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924211	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104050400-104086000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:104050600-104089600	Weak transcription	Psoas Muscle	Psoas
3	chr8:104051600-104087400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:104053200-104085600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:104055200-104087000	Weak transcription	K562	blood
6	chr8:104059400-104085200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:104059400-104085800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:104059600-104085400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:104065400-104085200	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:104066800-104091200	Weak transcription	Stomach Mucosa	stomach
11	chr8:104067800-104085800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:104068600-104085400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr8:104069800-104085600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:104069800-104085800	Weak transcription	Esophagus	oesophagus
15	chr8:104069800-104090800	Weak transcription	Aorta	Aorta
16	chr8:104071200-104085400	Strong transcription	Adipose Nuclei	Adipose
17	chr8:104072600-104086600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:104073400-104087600	Weak transcription	Colonic Mucosa	Colon
19	chr8:104073800-104088000	Weak transcription	Right Atrium	heart
20	chr8:104075000-104086400	Weak transcription	NHEK	skin
21	chr8:104077200-104085600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr8:104078000-104085800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:104079400-104087800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:104080000-104085600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr8:104080200-104085400	Strong transcription	Primary T cells from cord blood	blood
26	chr8:104080400-104091200	Weak transcription	Small Intestine	intestine
27	chr8:104081200-104085400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:104081200-104086400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:104081200-104088400	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:104081200-104089800	Weak transcription	Left Ventricle	heart
31	chr8:104081200-104091000	Weak transcription	Ovary	ovary
32	chr8:104081600-104086000	Weak transcription	Brain Substantia Nigra	brain
33	chr8:104081800-104086400	Weak transcription	Brain Angular Gyrus	brain
34	chr8:104081800-104087400	Weak transcription	HepG2	liver
35	chr8:104082000-104089000	Weak transcription	NHLF	lung
36	chr8:104082600-104090000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:104082600-104090200	Weak transcription	HMEC	breast
38	chr8:104082800-104085600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:104083000-104085400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:104083000-104085600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:104083000-104085800	Weak transcription	Hela-S3	cervix
42	chr8:104083200-104085800	Weak transcription	HUVEC	blood vessel
43	chr8:104083200-104089600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:104083200-104090200	Weak transcription	Primary B cells from cord blood	blood
45	chr8:104083200-104090600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:104083400-104085400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr8:104083400-104085800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:104083400-104085800	Weak transcription	Brain Anterior Caudate	brain
49	chr8:104083400-104085800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:104083400-104085800	Weak transcription	Duodenum Mucosa	Duodenum

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