Variant report

Variant	rs3019164
Chromosome Location	chr8:104031741-104031742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103873561..103877987-chr8:104030387..104035295,15	K562	blood:
2	chr8:103875552..103877856-chr8:104031071..104034645,4	K562	blood:
3	chr8:103874643..103878099-chr8:104031324..104040310,20	MCF-7	breast:
4	chr8:104026806..104029489-chr8:104031161..104032899,2	K562	blood:
5	chr8:104027811..104029796-chr8:104031590..104033402,2	MCF-7	breast:
6	chr8:104026806..104029489-chr8:104031161..104033140,3	K562	blood:
7	chr8:103873594..103879966-chr8:104029090..104036191,28	MCF-7	breast:
8	chr8:104024663..104026547-chr8:104030749..104032308,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000253663	Chromatin interaction
ENSG00000253320	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1159227	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1398272	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1473820	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1512350	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1512352	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1512353	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1512354	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017133	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2047374	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132861	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132862	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132864	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132865	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132866	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2388374	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2453992	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2453993	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454041	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454042	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454047	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454048	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458273	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458274	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458275	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458282	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458292	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458294	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515193	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515196	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515202	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515204	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2935587	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019160	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019165	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3133430	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs924211	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea
3	chr8:104026600-104032000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:104031600-104032400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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