Variant report

Variant	rs3133430
Chromosome Location	chr8:104058084-104058085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104056392..104058962-chr8:104062030..104065332,4	MCF-7	breast:
2	chr8:103870037..103872903-chr8:104056920..104059124,2	MCF-7	breast:
3	chr8:104055896..104058262-chr8:104063219..104065356,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000155097	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1159227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398272	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512353	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1512354	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047374	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132862	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132864	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132865	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132866	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454041	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454042	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458273	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458274	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458282	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458294	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515193	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515202	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515204	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2935587	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019160	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019164	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924211	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104034200-104068800	Weak transcription	Small Intestine	intestine
2	chr8:104034400-104059400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:104034400-104069400	Weak transcription	Esophagus	oesophagus
4	chr8:104034600-104059800	Weak transcription	A549	lung
5	chr8:104034600-104063600	Weak transcription	HSMMtube	muscle
6	chr8:104034600-104068400	Weak transcription	Right Ventricle	heart
7	chr8:104034800-104058800	Weak transcription	HSMM	muscle
8	chr8:104034800-104058800	Weak transcription	NH-A	brain
9	chr8:104034800-104065600	Weak transcription	Fetal Kidney	kidney
10	chr8:104034800-104074600	Weak transcription	NHEK	skin
11	chr8:104035400-104061800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:104035400-104071200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:104035800-104059400	Weak transcription	Thymus	Thymus
14	chr8:104035800-104061800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:104036200-104065200	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:104036800-104061200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:104037200-104063400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:104037200-104071400	Weak transcription	Fetal Brain Female	brain
19	chr8:104038000-104066800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:104038400-104059400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:104038600-104059400	Weak transcription	Gastric	stomach
22	chr8:104039000-104069400	Weak transcription	Spleen	Spleen
23	chr8:104039800-104061200	Weak transcription	GM12878-XiMat	blood
24	chr8:104040200-104071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:104040600-104071400	Weak transcription	Pancreas	Pancrea
26	chr8:104041000-104059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:104043800-104068200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:104044000-104058400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:104044000-104066400	Weak transcription	HMEC	breast
30	chr8:104046000-104068000	Weak transcription	NHLF	lung
31	chr8:104048400-104063800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:104048600-104059400	Weak transcription	Lung	lung
33	chr8:104049600-104059000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr8:104050200-104059200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:104050400-104069200	Weak transcription	Aorta	Aorta
36	chr8:104050400-104086000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:104050600-104059200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:104050600-104066600	Weak transcription	Ovary	ovary
39	chr8:104050600-104089600	Weak transcription	Psoas Muscle	Psoas
40	chr8:104050800-104061400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:104050800-104062400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:104050800-104067800	Weak transcription	Brain Substantia Nigra	brain
43	chr8:104050800-104069800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:104051600-104087400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr8:104051800-104058800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr8:104052600-104065400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:104052600-104066600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr8:104052800-104082200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr8:104053000-104059800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:104053000-104066800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links