Variant report

Variant	rs2458275
Chromosome Location	chr8:104072105-104072106
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr8:104072061-104072161	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:178361862..178364619-chr8:104071799..104074388,2	MCF-7	breast:
2	chr8:103878528..103880938-chr8:104070739..104073317,2	MCF-7	breast:
3	chr8:104068104..104073340-chr8:104073499..104077893,7	MCF-7	breast:
4	chr8:103874426..103878539-chr8:104071488..104074084,4	MCF-7	breast:
5	chr8:103880199..103883793-chr8:104071140..104073626,3	K562	blood:

No data

Variant related genes	Relation type
ATP6V1C1	TF binding region
ENSG00000155097	Chromatin interaction
ENSG00000038002	Chromatin interaction
ENSG00000253320	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1159227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398272	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473820	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512353	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1512354	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017133	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047374	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453992	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454041	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454042	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454048	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458273	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458274	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458282	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458294	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515193	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2935587	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019160	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019164	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924211	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104034800-104074600	Weak transcription	NHEK	skin
2	chr8:104050400-104086000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:104050600-104089600	Weak transcription	Psoas Muscle	Psoas
4	chr8:104051600-104087400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:104052800-104082200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:104053200-104073000	Weak transcription	Colonic Mucosa	Colon
7	chr8:104053200-104085600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104053600-104083800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:104054000-104084400	Strong transcription	Fetal Thymus	thymus
10	chr8:104054200-104083400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:104054200-104083800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104054200-104084400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr8:104055200-104087000	Weak transcription	K562	blood
14	chr8:104056200-104077000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:104057000-104084200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:104058800-104073600	Strong transcription	Dnd41	blood
17	chr8:104058800-104083400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr8:104059000-104072800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:104059000-104083600	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr8:104059200-104083600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr8:104059400-104083400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:104059400-104083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:104059400-104085200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:104059400-104085800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr8:104059600-104085400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:104059800-104083400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr8:104059800-104084000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr8:104060000-104083400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:104060000-104083600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:104060000-104083800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:104060200-104083000	Weak transcription	Gastric	stomach
32	chr8:104060800-104079200	Strong transcription	Placenta	Placenta
33	chr8:104061600-104084000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:104062600-104081000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:104063400-104083800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr8:104063800-104074800	Strong transcription	Fetal Lung	lung
37	chr8:104065000-104072400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:104065000-104085000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:104065400-104075200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:104065400-104085200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:104066000-104073200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr8:104066200-104075400	Strong transcription	Primary T cells from cord blood	blood
43	chr8:104066200-104075400	Strong transcription	GM12878-XiMat	blood
44	chr8:104066200-104076000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:104066600-104072400	Strong transcription	Ovary	ovary
46	chr8:104066600-104075000	Strong transcription	Fetal Muscle Leg	muscle
47	chr8:104066600-104075600	Strong transcription	Fetal Intestine Large	intestine
48	chr8:104066800-104075000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:104066800-104091200	Weak transcription	Stomach Mucosa	stomach
50	chr8:104067000-104080400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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