Variant report

Variant	rs214055
Chromosome Location	chr6:25560264-25560265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25553463..25555118-chr6:25558939..25560459,2	MCF-7	breast:
2	chr6:25558691..25560985-chr6:26021184..26023222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196176	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1028318	0.90[YRI][hapmap];0.95[AFR][1000 genomes]
rs1028319	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11969981	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12526321	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528159	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs150551	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17252870	0.80[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17253044	0.80[CEU][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs17491869	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs190045	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs2064128	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2294344	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs301393	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs35676593	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3788994	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804118	0.90[YRI][hapmap];0.96[AFR][1000 genomes]
rs3804133	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447724	0.82[ASN][1000 genomes]
rs4711085	0.87[EUR][1000 genomes]
rs4712950	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs57141743	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61340952	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935612	0.85[AFR][1000 genomes]
rs72839025	0.80[ASN][1000 genomes]
rs742130	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970674	chr6:25559891-25564508	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
11	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
12	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:25542400-25563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:25543800-25562000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
18	chr6:25544600-25565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:25551400-25565400	Weak transcription	Fetal Intestine Large	intestine
21	chr6:25553800-25565200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:25554200-25563800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:25554400-25567600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
25	chr6:25557200-25591400	Weak transcription	Ovary	ovary
26	chr6:25560000-25563400	Weak transcription	Primary T cells from cord blood	blood
27	chr6:25560000-25565400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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