Variant report

Variant	rs3804133
Chromosome Location	chr6:25552868-25552869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25545037..25548609-chr6:25549675..25554265,5	K562	blood:
2	chr6:25552369..25555196-chr6:25556821..25559327,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1028319	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10498728	1.00[YRI][hapmap]
rs11969981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12526321	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528159	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17252870	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17253044	0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17491869	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064128	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs214055	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2294344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs301393	0.83[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs35676593	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3788994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923725	1.00[YRI][hapmap]
rs4140641	1.00[AFR][1000 genomes]
rs4419666	1.00[YRI][hapmap]
rs447724	0.82[ASN][1000 genomes]
rs4711085	0.88[EUR][1000 genomes]
rs4712950	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs57141743	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61340952	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839025	0.80[ASN][1000 genomes]
rs742130	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
4	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
5	chr6:25516800-25606400	Weak transcription	Lung	lung
6	chr6:25519800-25556800	Weak transcription	Ovary	ovary
7	chr6:25522400-25588600	Weak transcription	HMEC	breast
8	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:25539600-25556800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
16	chr6:25539800-25558200	Weak transcription	Thymus	Thymus
17	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
18	chr6:25540800-25556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:25541200-25553400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:25541400-25558600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:25541800-25558400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:25542400-25563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:25543600-25555600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:25543800-25562000	Weak transcription	Adipose Nuclei	Adipose
28	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
29	chr6:25544600-25565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:25548800-25557000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:25551400-25555200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:25551400-25559200	Weak transcription	Primary T cells from cord blood	blood
34	chr6:25551400-25565400	Weak transcription	Fetal Intestine Large	intestine
35	chr6:25551800-25553600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:25552800-25553200	Enhancers	Primary B cells from peripheral blood	blood

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