Variant report

Variant	rs447724
Chromosome Location	chr6:25495218-25495219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12526321	1.00[ASN][1000 genomes]
rs12528159	0.80[ASN][1000 genomes]
rs17252870	1.00[ASN][1000 genomes]
rs17253044	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17491869	0.88[ASN][1000 genomes]
rs2064128	0.82[ASN][1000 genomes]
rs214055	0.82[ASN][1000 genomes]
rs301393	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301394	0.81[AFR][1000 genomes]
rs3788994	0.80[ASN][1000 genomes]
rs3804133	0.82[ASN][1000 genomes]
rs57141743	0.80[ASN][1000 genomes]
rs61340952	0.82[ASN][1000 genomes]
rs72839025	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:25449400-25515800	Weak transcription	Lung	lung
3	chr6:25456400-25499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:25456400-25515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
6	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:25464000-25498800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:25464200-25518400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:25465400-25499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:25466400-25516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:25466800-25515800	Weak transcription	Fetal Stomach	stomach
12	chr6:25471600-25597200	Weak transcription	Gastric	stomach
13	chr6:25473400-25495400	Weak transcription	Pancreas	Pancrea
14	chr6:25473600-25499600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:25473600-25516000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:25476800-25499800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:25477800-25499600	Weak transcription	NHLF	lung
18	chr6:25477800-25499800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:25478000-25499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:25478000-25499200	Weak transcription	NHEK	skin
21	chr6:25480000-25511400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:25480800-25523600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:25483000-25532200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:25483800-25499000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:25484000-25500000	Weak transcription	HMEC	breast
26	chr6:25484600-25505800	Weak transcription	Aorta	Aorta
27	chr6:25484800-25498200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:25484800-25515600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:25486400-25501600	Weak transcription	Fetal Brain Male	brain
30	chr6:25487600-25499600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:25488800-25497600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:25489000-25498800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:25490400-25496000	Weak transcription	Stomach Mucosa	stomach
34	chr6:25490400-25497400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:25490400-25499000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:25490400-25515800	Weak transcription	Thymus	Thymus
37	chr6:25490400-25521800	Weak transcription	GM12878-XiMat	blood
38	chr6:25490400-25543000	Weak transcription	Hela-S3	cervix
39	chr6:25490600-25524600	Weak transcription	A549	lung
40	chr6:25490800-25495400	Weak transcription	Adipose Nuclei	Adipose
41	chr6:25490800-25500000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:25490800-25500600	Weak transcription	Fetal Intestine Large	intestine
43	chr6:25490800-25506400	Weak transcription	Fetal Intestine Small	intestine
44	chr6:25490800-25511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:25490800-25515800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:25490800-25515800	Weak transcription	Ovary	ovary
47	chr6:25490800-25516400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:25490800-25521400	Weak transcription	Small Intestine	intestine
49	chr6:25491000-25495600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:25491000-25496000	Strong transcription	Duodenum Mucosa	Duodenum

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