Variant report

Variant	rs61340952
Chromosome Location	chr6:25564350-25564351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25563781..25566387-chr6:25576690..25578785,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1028319	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11969981	1.00[AFR][1000 genomes]
rs12526321	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528159	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17252870	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17253044	0.82[ASN][1000 genomes]
rs17491869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs214055	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2294344	1.00[AFR][1000 genomes]
rs301393	0.82[ASN][1000 genomes]
rs35676593	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3788994	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804133	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140641	1.00[AFR][1000 genomes]
rs447724	0.82[ASN][1000 genomes]
rs4711085	0.88[EUR][1000 genomes]
rs4712950	1.00[AFR][1000 genomes]
rs57141743	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72839025	0.80[ASN][1000 genomes]
rs742130	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970674	chr6:25559891-25564508	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
9	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
10	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
14	chr6:25544600-25565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:25551400-25565400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:25553800-25565200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:25554400-25567600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
20	chr6:25557200-25591400	Weak transcription	Ovary	ovary
21	chr6:25560000-25565400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:25563400-25568000	Strong transcription	Primary T cells from cord blood	blood
23	chr6:25563600-25565400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:25563800-25564400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:25564200-25582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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