Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1028319	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10498728	1.00[YRI][hapmap]
rs11969981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526321	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12528159	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17252870	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17253044	1.00[JPT][hapmap]
rs17322552	1.00[YRI][hapmap]
rs17491869	1.00[AFR][1000 genomes]
rs2064128	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs214055	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2294344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs301393	1.00[JPT][hapmap]
rs35676593	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3788994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3804133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3923725	1.00[YRI][hapmap]
rs4419666	1.00[YRI][hapmap]
rs4712950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57141743	1.00[AFR][1000 genomes]
rs60626645	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61340952	1.00[AFR][1000 genomes]
rs742130	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25629000-25638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
3	chr6:25632000-25637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:25632000-25638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:25634400-25635800	Enhancers	HepG2	liver
6	chr6:25634400-25636000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:25634600-25637000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:25634600-25637400	Enhancers	Fetal Intestine Large	intestine
9	chr6:25634800-25636800	Enhancers	Fetal Intestine Small	intestine
10	chr6:25635000-25635600	Enhancers	Brain Germinal Matrix	brain
11	chr6:25635400-25636600	Enhancers	Rectal Mucosa Donor 31	rectum

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