Variant report

Variant	rs2142768
Chromosome Location	chrX:57135540-57135541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57134683..57136912-chrX:57146581..57149282,2	K562	blood:
2	chrX:57095285..57097862-chrX:57134115..57136686,2	K562	blood:

Variant related genes	Relation type
ENSG00000226310	Chromatin interaction
ENSG00000237708	Chromatin interaction
ENSG00000186787	Chromatin interaction

rs_ID	r²[population]
rs10126276	0.95[YRI][hapmap]
rs11091631	0.95[YRI][hapmap]
rs12394031	1.00[YRI][hapmap]
rs2317097	1.00[YRI][hapmap]
rs5960893	1.00[YRI][hapmap]
rs5960904	0.86[YRI][hapmap]
rs5960905	0.95[YRI][hapmap]

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57107800-57147200	Weak transcription	Right Ventricle	heart
2	chrX:57108400-57147200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chrX:57109400-57147200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chrX:57114400-57139800	Weak transcription	Colon Smooth Muscle	Colon
5	chrX:57116200-57147200	Weak transcription	HSMM	muscle
6	chrX:57117000-57147800	Weak transcription	Primary B cells from cord blood	blood
7	chrX:57117600-57139000	Weak transcription	GM12878-XiMat	blood
8	chrX:57117600-57147200	Weak transcription	Spleen	Spleen
9	chrX:57118600-57147200	Weak transcription	Thymus	Thymus
10	chrX:57119600-57147200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chrX:57119600-57147200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:57119800-57147400	Weak transcription	Aorta	Aorta
13	chrX:57120000-57147200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chrX:57121600-57147200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chrX:57121800-57140000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chrX:57121800-57144200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chrX:57121800-57147200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chrX:57121800-57147200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chrX:57122000-57138200	Weak transcription	Brain Anterior Caudate	brain
20	chrX:57122000-57147200	Weak transcription	Fetal Intestine Small	intestine
21	chrX:57122000-57147200	Weak transcription	Left Ventricle	heart
22	chrX:57122000-57147200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chrX:57122000-57147400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chrX:57122000-57147400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chrX:57122000-57147400	Weak transcription	Small Intestine	intestine
26	chrX:57122200-57147400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chrX:57122400-57144600	Weak transcription	Fetal Intestine Large	intestine
28	chrX:57122600-57147200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chrX:57126000-57147200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chrX:57127200-57145800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chrX:57128000-57147400	Weak transcription	Primary B cells from peripheral blood	blood
32	chrX:57129400-57140600	Weak transcription	Primary T cells from cord blood	blood
33	chrX:57131000-57147200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chrX:57131600-57147200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chrX:57131800-57139800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chrX:57131800-57142400	Weak transcription	Fetal Muscle Trunk	muscle
37	chrX:57132800-57135600	Strong transcription	Adipose Nuclei	Adipose
38	chrX:57132800-57140000	Weak transcription	Placenta	Placenta
39	chrX:57132800-57147200	Weak transcription	NH-A	brain
40	chrX:57133000-57144400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chrX:57133200-57147200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chrX:57133200-57147200	Weak transcription	NHLF	lung
43	chrX:57133400-57135800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chrX:57133400-57135800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chrX:57133400-57135800	Strong transcription	Fetal Stomach	stomach
46	chrX:57133400-57136200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chrX:57133400-57136600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chrX:57133400-57147200	Weak transcription	Fetal Thymus	thymus
49	chrX:57133800-57136200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
50	chrX:57134000-57136000	Strong transcription	Fetal Muscle Leg	muscle

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