Variant report

Variant	rs2317097
Chromosome Location	chrX:57109715-57109716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57092387..57094103-chrX:57108267..57110859,2	MCF-7	breast:
2	chrX:57020265..57022869-chrX:57108723..57110742,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204271	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10126276	0.92[ASW][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap]
rs11091631	0.92[ASW][hapmap];0.92[LWK][hapmap];0.87[MKK][hapmap];0.95[YRI][hapmap]
rs12394031	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs2142768	1.00[YRI][hapmap]
rs5960893	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5960904	0.86[YRI][hapmap]
rs5960905	0.92[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57096400-57117000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chrX:57102400-57116600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chrX:57105800-57134600	Weak transcription	HSMMtube	muscle
4	chrX:57106400-57116800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chrX:57106800-57117000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chrX:57107000-57116400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:57107200-57116800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:57107600-57118200	Weak transcription	A549	lung
9	chrX:57107600-57119000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chrX:57107800-57121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chrX:57107800-57147200	Weak transcription	Right Ventricle	heart
12	chrX:57108000-57116600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chrX:57108200-57109800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chrX:57108200-57109800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chrX:57108200-57110000	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chrX:57108400-57111000	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chrX:57108400-57116400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chrX:57108400-57147200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chrX:57108600-57110000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chrX:57108600-57110000	ZNF genes & repeats	Pancreas	Pancrea
21	chrX:57108800-57109800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chrX:57108800-57109800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:57108800-57109800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
24	chrX:57108800-57109800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chrX:57108800-57110000	Strong transcription	Left Ventricle	heart
26	chrX:57108800-57110200	ZNF genes & repeats	Aorta	Aorta
27	chrX:57109000-57110000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chrX:57109000-57110200	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chrX:57109200-57109800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chrX:57109200-57110000	ZNF genes & repeats	Fetal Stomach	stomach
31	chrX:57109200-57110000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
32	chrX:57109200-57116200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chrX:57109200-57125600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chrX:57109400-57109800	Strong transcription	Gastric	stomach
35	chrX:57109400-57117200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chrX:57109400-57147200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chrX:57109600-57111800	Weak transcription	Ovary	ovary
38	chrX:57109600-57116200	Weak transcription	Liver	Liver
39	chrX:57109600-57120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chrX:57109600-57121400	Weak transcription	Brain Angular Gyrus	brain
41	chrX:57109600-57122600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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