The 2.0 version of rSNPBase

Variant report

Variant rs2146560
Chromosome Location chr1:47095398-47095399
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47083000-47097200 Weak transcription Gastric stomach
2 chr1:47083000-47100000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:47083200-47095400 Weak transcription Fetal Thymus thymus
4 chr1:47083200-47095600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr1:47083200-47097200 Weak transcription Primary B cells from cord blood blood
6 chr1:47083200-47097200 Weak transcription Aorta Aorta
7 chr1:47083200-47097200 Weak transcription Thymus Thymus
8 chr1:47083200-47100200 Weak transcription Psoas Muscle Psoas
9 chr1:47083200-47104600 Weak transcription Stomach Mucosa stomach
10 chr1:47083200-47115000 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:47083400-47095600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr1:47083400-47095600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:47083400-47095600 Weak transcription Duodenum Mucosa Duodenum
14 chr1:47083400-47095600 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr1:47083400-47096800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:47083400-47097000 Weak transcription Colon Smooth Muscle Colon
17 chr1:47083400-47097400 Weak transcription Brain Substantia Nigra brain
18 chr1:47083400-47113200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:47084800-47097000 Weak transcription Primary monocytes fromperipheralblood blood
20 chr1:47085600-47099000 Weak transcription GM12878-XiMat blood
21 chr1:47085800-47097200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:47085800-47097600 Weak transcription Primary B cells from peripheral blood blood
23 chr1:47087800-47097000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:47088000-47098000 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:47088000-47100800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:47088200-47097000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:47088200-47097200 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr1:47088200-47097200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:47088200-47097200 Weak transcription NH-A brain
30 chr1:47088200-47097400 Weak transcription Osteobl bone
31 chr1:47088200-47097800 Weak transcription HSMMtube muscle
32 chr1:47088200-47097800 Weak transcription NHDF-Ad bronchial
33 chr1:47088200-47098000 Weak transcription Colonic Mucosa Colon
34 chr1:47088200-47100000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:47088200-47100000 Weak transcription Spleen Spleen
36 chr1:47088200-47131600 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr1:47088400-47095600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:47088400-47097200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:47088400-47097400 Weak transcription NHEK skin
40 chr1:47088400-47098000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:47088400-47098000 Weak transcription Rectal Smooth Muscle rectum
42 chr1:47088600-47108600 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:47088600-47108800 Weak transcription Hela-S3 cervix
44 chr1:47088800-47095600 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:47088800-47095800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:47089800-47096800 Weak transcription Fetal Stomach stomach
47 chr1:47089800-47112400 Weak transcription Small Intestine intestine
48 chr1:47090000-47096000 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:47090000-47096600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:47090000-47097200 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015