Variant report

Variant	rs2148522
Chromosome Location	chr13:92949346-92949347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10162003	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1887156	0.81[AMR][1000 genomes]
rs1926633	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1926635	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1926637	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1926638	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1926639	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4338645	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4505184	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4771857	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6492604	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs716623	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs716624	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7323550	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7325768	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7330825	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7331847	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7332756	0.88[EUR][1000 genomes]
rs7490525	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7981777	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7985663	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7996497	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7997136	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9284270	0.81[AMR][1000 genomes]
rs9301792	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523630	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9589486	0.81[ASN][1000 genomes]
rs9589506	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9589511	0.80[ASN][1000 genomes]
rs9589512	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9589513	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92943600-92950400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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