Variant report

Variant	rs1887156
Chromosome Location	chr13:92955371-92955372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10162003	0.85[JPT][hapmap]
rs11616708	0.91[CEU][hapmap];0.87[CHB][hapmap];0.94[EUR][1000 genomes]
rs11616739	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs13378344	0.86[CHB][hapmap]
rs16947290	0.86[CHB][hapmap]
rs1887155	0.86[CHB][hapmap];0.81[GIH][hapmap]
rs1926624	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1926628	0.91[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs1926631	0.85[JPT][hapmap]
rs1926638	0.81[JPT][hapmap]
rs1926639	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs1926641	0.81[JPT][hapmap]
rs1926642	0.81[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs1926643	0.81[JPT][hapmap]
rs1926644	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs1926645	0.81[JPT][hapmap]
rs1926646	0.81[JPT][hapmap]
rs1926647	0.81[JPT][hapmap]
rs1926650	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs2148522	0.81[AMR][1000 genomes]
rs4085672	0.86[CHB][hapmap]
rs6492597	0.81[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs6492598	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492600	0.81[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs6492602	0.81[JPT][hapmap]
rs716623	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs7317136	0.83[CEU][hapmap]
rs7327328	0.91[CEU][hapmap];0.93[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs7332149	0.81[JPT][hapmap]
rs7334109	0.81[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7985916	0.81[GIH][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs7994032	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997136	0.81[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs8001201	0.93[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9284270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284271	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301791	0.87[CEU][hapmap]
rs9301792	0.83[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs943286	0.86[CHB][hapmap]
rs9516062	0.81[JPT][hapmap]
rs9523597	0.87[CEU][hapmap];0.81[CHD][hapmap]
rs9584023	0.81[JPT][hapmap]
rs9589492	0.93[CHB][hapmap]
rs9589493	0.86[CHB][hapmap]
rs9589494	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92954400-92956200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links