Variant report

Variant	rs13378344
Chromosome Location	chr13:92962685-92962686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92961385..92963031-chr13:92979111..92982076,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10492502	0.87[CEU][hapmap]
rs1072917	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11616708	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs11616739	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs13378505	0.81[JPT][hapmap]
rs16947189	0.85[CEU][hapmap]
rs16947253	0.87[CEU][hapmap]
rs16947290	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16952627	0.88[CEU][hapmap]
rs1887155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887156	0.86[CHB][hapmap]
rs1926624	0.86[CHB][hapmap]
rs1926628	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1926632	0.81[JPT][hapmap]
rs4085672	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771856	0.81[JPT][hapmap]
rs6492598	0.86[CHB][hapmap]
rs72638628	0.87[AMR][1000 genomes]
rs7327328	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7994032	0.86[CHB][hapmap]
rs8001201	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9284270	0.86[CHB][hapmap]
rs9284271	0.86[CHB][hapmap]
rs943286	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584020	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9584022	0.81[JPT][hapmap]
rs9589470	0.87[CEU][hapmap]
rs9589487	0.85[AMR][1000 genomes]
rs9589492	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9589493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9589496	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9589504	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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