Variant report

Variant	rs9589492
Chromosome Location	chr13:92952486-92952487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92951893..92954281-chr13:92957574..92960507,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10492502	0.93[CEU][hapmap]
rs1072917	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11616708	0.81[CHB][hapmap]
rs11616739	0.86[CHB][hapmap]
rs13378344	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs16947189	0.92[CEU][hapmap]
rs16947253	0.93[CEU][hapmap];0.83[CHB][hapmap]
rs16947290	0.93[CHB][hapmap]
rs16952627	0.93[CEU][hapmap]
rs1887155	0.81[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1887156	0.93[CHB][hapmap]
rs1926624	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs1926628	0.87[CHB][hapmap]
rs4085672	0.93[CEU][hapmap];0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6492598	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs72638628	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7325201	0.82[JPT][hapmap]
rs7327328	0.86[CHB][hapmap]
rs7982677	0.85[JPT][hapmap]
rs7994032	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs8001201	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9284270	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs9284271	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs943286	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584020	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584021	0.85[JPT][hapmap]
rs9589470	0.93[CEU][hapmap]
rs9589487	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9589493	0.81[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9589494	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs9589496	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9589508	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92951000-92952600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:92952400-92952800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:92952400-92953800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links