Variant report

Variant	rs10492502
Chromosome Location	chr13:92923167-92923168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1016908	0.85[JPT][hapmap]
rs12874185	0.84[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs12877870	0.84[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs13378344	0.87[CEU][hapmap]
rs16947189	0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16947237	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16947253	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs16952627	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1887155	0.87[CEU][hapmap]
rs28800355	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4085672	1.00[CEU][hapmap]
rs6492593	0.84[CHD][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap]
rs72638628	0.86[EUR][1000 genomes]
rs7981189	0.85[JPT][hapmap]
rs7984662	0.84[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs7993595	0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap]
rs9301791	0.83[YRI][hapmap]
rs943286	0.93[CEU][hapmap]
rs9523559	0.87[JPT][hapmap]
rs9523571	0.84[JPT][hapmap]
rs9523572	0.85[JPT][hapmap]
rs9523597	0.93[GIH][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.83[YRI][hapmap]
rs9589468	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9589470	0.91[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9589484	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9589487	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9589492	0.93[CEU][hapmap]
rs9589493	0.87[CEU][hapmap]
rs9589494	0.87[CEU][hapmap]
rs9589496	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv916531	chr13:92922404-92941030	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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