Variant report

Variant	rs9589494
Chromosome Location	chr13:92956865-92956866
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92956827..92958387-chr13:92959759..92961351,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10492502	0.87[CEU][hapmap]
rs11616708	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs11616739	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs13378344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13378505	0.81[JPT][hapmap]
rs16947189	0.85[CEU][hapmap]
rs16947253	0.87[CEU][hapmap]
rs16947290	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16952627	0.88[CEU][hapmap]
rs1887155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887156	0.86[CHB][hapmap]
rs1887157	0.97[AFR][1000 genomes]
rs1926624	0.86[CHB][hapmap]
rs1926628	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1926632	0.81[JPT][hapmap]
rs4085672	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771856	0.81[JPT][hapmap]
rs6492598	0.86[CHB][hapmap]
rs7327328	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7994032	0.86[CHB][hapmap]
rs8001201	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9284270	0.86[CHB][hapmap]
rs9284271	0.86[CHB][hapmap]
rs9301794	1.00[YRI][hapmap]
rs943286	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584020	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9584022	0.81[JPT][hapmap]
rs9589470	0.87[CEU][hapmap]
rs9589492	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9589493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589496	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9589504	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links