Variant report

Variant	rs11616739
Chromosome Location	chr13:92960693-92960694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92958679..92961533-chr13:93089880..93091566,2	K562	blood:
2	chr13:92956827..92958387-chr13:92959759..92961351,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10162003	0.81[EUR][1000 genomes]
rs11616708	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874185	0.80[CHD][hapmap]
rs12877870	0.80[CHD][hapmap]
rs13378344	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs16947290	0.93[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs1887155	0.93[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1887156	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.94[EUR][1000 genomes]
rs1926624	0.87[CEU][hapmap];0.93[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs1926628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926629	0.82[JPT][hapmap]
rs1926633	0.81[EUR][1000 genomes]
rs1926635	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1926637	0.81[EUR][1000 genomes]
rs1926638	0.81[EUR][1000 genomes]
rs1926639	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs1926642	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs1926644	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs1926650	0.82[JPT][hapmap];0.85[TSI][hapmap]
rs4085672	0.93[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4338645	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs4508310	0.81[JPT][hapmap]
rs4771857	0.80[EUR][1000 genomes]
rs6492593	0.80[CHD][hapmap]
rs6492597	0.82[JPT][hapmap];0.87[TSI][hapmap]
rs6492598	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6492599	0.82[JPT][hapmap]
rs6492600	0.82[JPT][hapmap];0.87[TSI][hapmap]
rs716623	0.82[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs716624	0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs7323550	0.80[EUR][1000 genomes]
rs7325768	0.80[EUR][1000 genomes]
rs7327328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs7330825	0.80[EUR][1000 genomes]
rs7332756	0.82[JPT][hapmap]
rs7334109	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs7490525	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs7981777	0.81[EUR][1000 genomes]
rs7984662	0.80[CHD][hapmap]
rs7985916	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs7993595	0.80[CHD][hapmap]
rs7994032	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7996497	0.80[EUR][1000 genomes]
rs7997136	0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs7998166	0.82[JPT][hapmap]
rs8001201	0.86[CHB][hapmap]
rs9284270	0.91[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs9284271	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943286	0.93[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9516060	0.82[JPT][hapmap]
rs9516063	0.82[JPT][hapmap]
rs9523630	0.81[EUR][1000 genomes]
rs9584020	0.82[ASN][1000 genomes]
rs9589492	0.86[CHB][hapmap]
rs9589493	0.93[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs9589494	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9589496	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9589506	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs9589512	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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